- Department of Anatomy, Histology, Topographic Anatomy named after Professor N. A. Khlopov
- Department of Biochemistry and Chemical Disciplines named after Doctor of Medical Sciences, Professor S. O. Tapbergenov
- Department of Cardiovascular and Thoracic Surgery named after B.S. Bulanov
- Department of Children’s Infectious Diseases
- Department of Clinical Oncology and Nuclear Medicine named after D. R. Mussinov
- Department of Dental Disciplines and Maxillofacial Surgery
- Department of Emergency Medicine named after Professor Corresponding Member of NANS of RK A.Z. Dyussupov
- Department of Epidemiology and Biostatistics
- Department of General Educational Disciplines
- Department of General Medical Practice of Semey city
- Department of General Medical Practice, Ust-Kamenogorsk
- Department of Hospital Surgery, Anesthesiology and Resuscitation
- Department of Infectious Diseases, Dermatovenerology and Immunology
- Department of Internal Medicine and Rheumatology
- Department of Microbiology named after Professor M. M. Urazalin
- Department of Military Training
- Department of Molecular Biology and Medical Genetics named after the academician of National Academy of sciences Republic of Kazakhstan Raissov T. K.
- Department of Neurology, Ophthalmology and Otorhinolaryngology
- Department of Nursing
- Department of Obstetrics and Gynecology named after A. A. Kozbagarov
- Department of Pathological Anatomy and Forensic Medicine named after MD, Professor Yu. V. Pruglo
- Department of Pediatrics and Medical Rehabilitation named after D. M. Tusupova
- Department of Pharmacology named after MD, Professor M.N. Mussin
- Department of Physical Culture
- Department of Physiological Disciplines named after Honored Scientist of the Republic of Kazakhstan T. A. Nazarova
- Department of Propaedeutics of Children’s Diseases
- Department of Propaedeutics of Internal Diseases
- Department of Psychiatry and Narcology
- Department of Public Health
- Department of Radiology
- Department of Simulation and Educational Technologies
- Department of Surgical Disciplines
- Department of Therapy
- Department of Traumatology and Pediatric Surgery